Development of chloroplast microsatellite markers for Glyptostrobus pensilis (Cupressaceae)
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چکیده
منابع مشابه
Development of nuclear and chloroplast microsatellite markers for the endangered conifer Callitris sulcata (Cupressaceae)1
PREMISE OF THE STUDY Microsatellite markers were developed for Callitris sulcata (Cupressaceae), an endangered conifer species in New Caledonia. METHODS AND RESULTS Using sequencing by synthesis (SBS) of an RNA-Seq library, 15 polymorphic nuclear and chloroplast microsatellite markers were developed. When evaluated with 48 individuals, these markers showed genetic variations ranging from two ...
متن کاملPopulation structure and genetic diversity of an endangered species, Glyptostrobus pensilis (Cupressaceae)
Glyptostrobus pensilis (Staunton ex D. Don) K. Koch is a critically endangered species, only distributed in South China and Vietnam. Genetic variation within and between populations was investigated using inter-simple sequence repeat (ISSR). One hundred and seventy individuals from fourteen populations representing five regions in southern and southeastern China were sampled. The results show t...
متن کاملThe Complete Chloroplast Genome Sequence of a Relict Conifer Glyptostrobus pensilis: Comparative Analysis and Insights into Dynamics of Chloroplast Genome Rearrangement in Cupressophytes and Pinaceae
Glyptostrobus pensilis, belonging to the monotypic genus Glyptostrobus (Family: Cupressaceae), is an ancient conifer that is naturally distributed in low-lying wet areas. Here, we report the complete chloroplast (cp) genome sequence (132,239 bp) of G. pensilis. The G. pensilis cp genome is similar in gene content, organization and genome structure to the sequenced cp genomes from other cupresso...
متن کاملChloroplast microsatellite markers for Artocarpus (Moraceae) developed from transcriptome sequences1
PREMISE OF THE STUDY Chloroplast microsatellite loci were characterized from transcriptomes of Artocarpus altilis (breadfruit) and A. camansi (breadnut). They were tested in A. odoratissimus (terap) and A. altilis and evaluated in silico for two congeners. METHODS AND RESULTS Fifteen simple sequence repeats (SSRs) were identified in chloroplast sequences from four Artocarpus transcriptome ass...
متن کاملDevelopment of chloroplast microsatellite markers for the endangered Maianthemum bicolor (Asparagaceae s.l.)1
PREMISE OF THE STUDY Ten polymorphic chloroplast microsatellite (cpSSR) markers were developed and characterized in an endemic and endangered herb, Maianthemum bicolor (Asparagaceae s.l.), for use in conservation genetics. METHODS AND RESULTS Primer sets flanking each of the 10 cpSSR loci in noncoding regions of the chloroplast genome of M. bicolor were designed. These cpSSR markers were test...
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ژورنال
عنوان ژورنال: Applications in Plant Sciences
سال: 2019
ISSN: 2168-0450,2168-0450
DOI: 10.1002/aps3.11277